This lore handling addon will let you specify the order of enchantment listing. Any enchantments not listed in the config will be placed at the bottom of the list.
Installation:
To install this addon, just place TEAddon-CustomOrderedLore-x.x.x.jar in 'plugin/TokenEnchant/addons' folder and restart the server.
Configuration:
You can list custom enchantments' names, which were used in TokenEnchant's config.yml or CE's _config.yml in CustomOrderedLore_config.yml